Very cool demonstration on how protein folding occurs. You can change the two torsion angles and see how the rest of the molecule moves in concert. From the page:
This Demonstration presents a simplified schematic representation of the possible motions of a protein chain. Two amino-acid units, with side groups and , are shown. The green cylinders represent the continuation of the protein chain in each direction. The torsional angles R1 and R2 can be independently varied between 0° and 360°. The immense number of possibilities, for just two of the hundreds or thousands of configuration variables, is soon apparent. Remarkably, a linear sequence of amino acids will biologically self-assemble in a matter of milliseconds!
This uses the Wolfram CDF player to display the demonstration so make sure you download that first.
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